DNA Binding Motif

Accessions: 1hlz_B (3D-footprint 20231221)
Names: ORPHAN NUCLEAR RECEPTOR NR1D1
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT
Length: 10
Consensus: aAnnaGGTCA
Weblogo:
PSSM: P0 A C G T
01 60 12 12 12 a
02 96 0 0 0 A
03 24 24 24 24 n
04 24 24 24 24 n
05 60 12 12 12 a
06 0 0 84 12 G
07 0 0 96 0 G
08 0 0 0 96 T
09 0 96 0 0 C
10 96 0 0 0 A
Binding TFs: 1hlz_B (Zinc finger, C4 type (two domains))
Binding Sites: 1hlz_D
1hlz_C
Publications: Sierk M.L, Zhao Q, Rastinejad F. DNA deformability as a recognition feature in the reverb response element. Biochemistry 40:12833-43 (2001). [Pubmed]

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