DNA Binding Motif

						

			
Accessions: CN0004.1 (JASPAR 2024)

			
Names: LM4
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 22
Consensus: gGcmTkCTGGGArwTGTAGTyy
Weblogo: 
PSSM: P0      A      C      G      T
01    392     83    960    442      g
02     91     64   1662     60      G
03    168   1150    444    115      c
04    850    767     91    169      m
05     77    361    153   1286      T
06     67    386    787    637      k
07    165   1451    117    144      C
08     36    293     18   1530      T
09     38      4   1822     13      G
10     13      8   1846     10      G
11     59     16   1780     22      G
12   1661     44    112     60      A
13    822    229    681    145      r
14    617    216    176    868      w
15     37    191     63   1586      T
16     52     22   1798      5      G
17     71     92    108   1606      T
18   1723     17    113     24      A
19     21     37   1790     29      G
20     15     29     46   1787      T
21     42    875     81    879      y
22     63   1080     68    666      y
			
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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