DNA Binding Motif

Accessions: MA0553.1 (JASPAR 2018)
Names: SMZ
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Notes: ChIP-chip
Length: 8
Consensus: YCTCGTAC
Weblogo:
PSSM: P0 A C G T
01 0 105 0 42 Y
02 0 119 28 0 C
03 0 0 0 147 T
04 0 147 0 0 C
05 0 0 147 0 G
06 0 0 25 122 T
07 135 12 0 0 A
08 0 147 0 0 C
Binding TFs: Q6PV68 (AP2 domain)
Binding Sites: MA0553.1.1
MA0553.1.10
MA0553.1.11
MA0553.1.12
MA0553.1.13
MA0553.1.14
MA0553.1.15
MA0553.1.16
MA0553.1.17
MA0553.1.18
MA0553.1.19
MA0553.1.2
MA0553.1.20
MA0553.1.3
MA0553.1.4
MA0553.1.5
MA0553.1.6
MA0553.1.7
MA0553.1.8
MA0553.1.9
Publications: Mathieu J, Yant LJ, Mürdter F, Küttner F, Schmid M. Repression of flowering by the miR172 target SMZ. PLoS Biol : (2009). [Pubmed]

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