DNA Binding Motif

Accessions: 1mdy_CD (3D-footprint 20231221)
Names: PROTEIN (MYOD BHLH DOMAIN)
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES ON DNA RECOGNITION AND IMPLICATIONS FOR TRANSCRIPTIONAL ACTIVATION
Length: 7
Consensus: CAnnTGt
Weblogo:
PSSM: P0 A C G T
01 0 96 0 0 C
02 78 6 6 6 A
03 24 24 24 24 n
04 24 24 24 24 n
05 8 7 7 74 T
06 0 0 96 0 G
07 19 19 19 39 t
Binding TFs: 1mdy_C / 1mdy_D (Helix-loop-helix DNA-binding domain)
Binding Sites: 1mdy_G / 1mdy_H
Publications: Ma P. C. M., Rould M. A., Weintraub H., Pabo C. O. Crystal structure of MyoD bHLH domain-DNA complex: perspectives on DNA recognition and implications for transcriptional activation. Cell 77:451-459 (1994). [Pubmed]

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