DNA Binding Motif

Accessions: 6ryi_AB (3D-footprint 20231221)
Names: Protein WUSCHEL
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: WUS-HD bound to G-Box DNA
Length: 14
Consensus: CCATCACGTGACnA
Weblogo:
PSSM: P0 A C G T
01 7 73 7 9 C
02 7 73 9 7 C
03 73 7 9 7 A
04 0 0 0 96 T
05 0 96 0 0 C
06 96 0 0 0 A
07 9 73 7 7 C
08 0 0 96 0 G
09 0 0 0 96 T
10 0 0 96 0 G
11 96 0 0 0 A
12 0 96 0 0 C
13 24 24 24 24 n
14 96 0 0 0 A
Binding TFs: 6ryi_A / 6ryi_B (Homeobox domain)
Binding Sites: 6ryi_F
6ryi_G
Publications: Sloan J, Hakenjos JP, Gebert M, Ermakova O, Gumiero A, Stier G, Wild K, Sinning I, Lohmann JU. Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL. Nat Commun 11:2223 (2020). [Pubmed]

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