DNA Binding Motif

Accessions: 4cyc_B (3D-footprint 20231221)
Names: HOMEOBOX PROTEIN EXTRADENTICLE
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS
Length: 6
Consensus: wnTCAc
Weblogo:
PSSM: P0 A C G T
01 27 13 13 43 w
02 24 24 24 24 n
03 0 0 0 96 T
04 0 96 0 0 C
05 96 0 0 0 A
06 13 54 13 16 c
Binding TFs: 4cyc_B (Homeobox domain, Homeobox KN domain)
Binding Sites: 4cyc_C
4cyc_D
Publications: Foos N, Maurel-Zaffran C, Maté M.J, Vincentelli R, Hainaut M, Berenger H, Pradel J, Saurin A.J, Ortiz-Lombardía M, Graba Y. A flexible extension of the Drosophila ultrabithorax homeodomain defines a novel Hox/PBC interaction mode. Structure (London, England : 1993) 23:270-9 (2015). [Pubmed]

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