DNA Binding Motif

						

			
Accessions: MA1415.1 (JASPAR 2024)

			
Names: REF6
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: rAAACAGAGya
Weblogo: 
PSSM: P0      A      C      G      T
01   1983    209   1144    351      r
02   2634    137    577    339      A
03   3458     27     24    178      A
04   3511     34    118     24      A
05      1   3661      1     24      C
06   3622     25     30     10      A
07      6     21   3625     35      G
08   3533     21    105     28      A
09     45     10   3581     51      G
10    752   1063    884    988      y
11   2249    473    441    524      a
Type: Heterodimer
Binding TFs: Q9STM3 (Zinc finger, C2H2 type, JmjC domain, hydroxylase, jmjN domain, Zinc-finger double domain, C2H2-type zinc finger)
Q9STM3
			
Publications: Li C, Gu L, Gao L, Chen C, Wei CQ, Qiu Q, Chien CW, Wang S, Jiang L, Ai LF, Chen CY, Yang S, Nguyen V, Qi Y, Snyder MP, Burlingame AL, Kohalmi SE, Huang S, Cao X, Wang ZY, Wu K, Chen X, Cui Y. Concerted genomic targeting of H3K27 demethylase REF6 and chromatin-remodeling ATPase BRM in Arabidopsis. Nat Genet 48:687-93 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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