DNA Binding Motif

Accessions: MA1371.1 (JASPAR 2024), M0305 (AthalianaCistrome v4_May2016)
Names: IDD4, IDD4.DAP, T07804;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 17
Consensus: mAsAAAAmGACAAAAww
Weblogo:
PSSM: P0 A C G T
01 213 233 42 103 m
02 429 5 140 17 A
03 57 250 242 42 s
04 430 0 14 147 A
05 510 0 0 81 A
06 470 29 78 14 A
07 529 42 16 4 A
08 186 301 78 26 m
09 16 0 575 0 G
10 580 10 0 1 A
11 0 591 0 0 C
12 585 0 6 0 A
13 581 3 7 0 A
14 547 15 23 6 A
15 448 24 35 84 A
16 309 71 61 150 w
17 264 72 61 194 w
Type: Heterodimer
Binding TFs: Q8GYC1 / T07804 (Zinc finger, C2H2 type, Zinc-finger double-stranded RNA-binding)
Q8GYC1
Binding Sites: MA1371.1.1
MA1371.1.10
MA1371.1.11
MA1371.1.12
MA1371.1.13
MA1371.1.14
MA1371.1.15
MA1371.1.16
MA1371.1.17
MA1371.1.18
MA1371.1.19
MA1371.1.2
MA1371.1.20
MA1371.1.3
MA1371.1.4
MA1371.1.5
MA1371.1.6
MA1371.1.7
MA1371.1.8
MA1371.1.9
Publications: Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.