DNA Binding Motif

Accessions: MA0141.2 (JASPAR 2024)
Names: Esrrb
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 12
Consensus: rgsyCAAGGTCA
Weblogo:
PSSM: P0 A C G T
01 1055 801 984 773 r
02 673 832 1352 767 g
03 403 1212 1212 807 s
04 260 1230 449 1702 y
05 312 2653 630 51 C
06 3347 32 248 27 A
07 3590 2 60 6 A
08 33 2 3597 29 G
09 12 11 3622 16 G
10 180 43 243 3192 T
11 9 3394 167 85 C
12 3478 21 128 26 A
Type: Heterodimer
Binding TFs: Q61539 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
Q61539
Publications: Chen X, Xu H, Yuan P, Fang F, Huss M, Vega V.B, Wong E, Orlov Y.L, Zhang W, Jiang J, Loh Y.H, Yeo H.C, Yeo Z.X, Narang V, Govindarajan K.R, Leong B, Shahab A, Ruan Y, Bourque G, Sung W.K, Clarke N.D, Wei C.L, Ng H.H. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133:1106-17 (2008). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.