DNA Binding Motif

Accessions: 6cnc_R (3D-footprint 20231221)
Names: Transcription factor IIIB 70 kDa subunit,TATA-box-binding protein,Transcription factor IIIB 70 kDa subunit
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Yeast RNA polymerase III open complex
Length: 26
Consensus: AnnnnnnnnnnnnnACTAATAnnTGT
Weblogo:
PSSM: P0 A C G T
01 96 0 0 0 A
02 24 24 24 24 n
03 24 24 24 24 n
04 24 24 24 24 n
05 24 24 24 24 n
06 24 24 24 24 n
07 24 24 24 24 n
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 24 24 24 24 n
12 24 24 24 24 n
13 24 24 24 24 n
14 24 24 24 24 n
15 96 0 0 0 A
16 0 96 0 0 C
17 0 0 0 96 T
18 96 0 0 0 A
19 75 7 7 7 A
20 0 0 0 96 T
21 73 7 7 9 A
22 24 24 24 24 n
23 24 24 24 24 n
24 7 9 7 73 T
25 0 0 96 0 G
26 9 7 7 73 T
Binding TFs: 6cnc_R (Transcription factor TFIID (or TATA-binding protein, TBP), Transcription factor TFIIB repeat, Brf1-like TBP-binding domain, TFIIB zinc-binding)
Binding Sites: 6cnc_X
6cnc_Y
Publications: Han Y, Yan C, Fishbain S, Ivanov I, He Y. Structural visualization of RNA polymerase III transcription machineries. Cell Discov : (2018). [Pubmed]

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