DNA Binding Motif

						

			
Accessions: MA1149.1 (JASPAR 2024)

			
Names: RARA::RXRG
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SMiLE-seq
Length: 18
Consensus: rrGGTCAwgkarrGGtCA
Weblogo: 
PSSM: P0      A      C      G      T
01    345    113    413    129      r
02    496     38    460      6      r
03     13      3    954     30      G
04     11      3    828    158      G
05      5     15     71    909      T
06     18    831     58     93      C
07    874      5    111     10      A
08    272    239    154    334      w
09    215    249    320    215      g
10    211    212    272    305      k
11    344    199    231    227      a
12    348    133    397    121      r
13    495     90    390     25      r
14     26      4    927     43      G
15     12      5    815    169      G
16     60    112    226    601      t
17     73    696     97    135      C
18    702     53    206     40      A
Type: Heterodimer
Binding TFs: P48443 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), Nuclear/hormone receptor activator site AF-1)
P48443
			
Publications: Rastinejad F., Wagner T., Zhao Q., Khorasanizadeh S. Structure of the RXR-RAR DNA-binding complex on the retinoic acid response element DR1.. EMBO J. 19:1045-1054 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.