DNA Binding Motif

Accessions: 5zjr_AB (3D-footprint 20231221)
Names: Homeobox protein abdominal-B
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of AbdB/Exd complex bound to a 'Magenta14' DNA sequence
Length: 10
Consensus: TnmTATATCA
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 24 24 24 24 n
03 41 29 13 13 m
04 0 0 0 96 T
05 68 13 0 15 A
06 13 0 1 82 T
07 96 0 0 0 A
08 0 0 0 96 T
09 0 96 0 0 C
10 96 0 0 0 A
Type: Heterodimer
Binding TFs: 5zjr_A (Homeobox domain)
5zjr_B (Homeobox domain, Homeobox KN domain)
Binding Sites: 5zjr_C
5zjr_D
Publications: Zeiske T, Baburajendran N, Kaczynska A, Brasch J, Palmer AG 3rd, Shapiro L, Honig B, Mann RS. Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites. Cell Rep 24:2221-2230 (2018). [Pubmed]

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