DNA Binding Motif

Accessions: CDX1_HUMAN.H10MO.C|M01046 (HOCOMOCO 10), CDX1_MOUSE.H10MO.C|M01028 (HOCOMOCO 10)
Names: CDX1
Organisms: Homo sapiens, Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: HOX-related factors{3.1.1}; CDX (Caudal type homeobox){3.1.1.9}
Length: 8
Consensus: aTTTAtGk
Weblogo:
PSSM: P0 A C G T
01 14 7 2 7 a
02 1 0 3 26 T
03 1 0 1 28 T
04 2 2 4 22 T
05 24 0 5 1 A
06 7 3 1 19 t
07 6 0 24 0 G
08 6 3 10 11 k
Type: Heterodimer
Binding TFs: CDX1_MOUSE (Homeobox domain, Caudal like protein activation region)
CDX1_HUMAN (Homeobox domain, Caudal like protein activation region)
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.