DNA Binding Motif

Accessions: AG (Athamap 20091028), MA0005.2 (JASPAR 2018)
Names: AG
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1, JASPAR 2018 2
1 Bülow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed]
2 [Pubmed]
Notes: SELEX
Length: 18
Consensus: hTTwCCwWAwwdGGhAat
Weblogo:
PSSM: P0 A C G T
01 21 20 6 19 h
02 9 3 3 51 T
03 10 0 1 55 T
04 29 8 8 21 w
05 0 66 0 0 C
06 0 65 0 1 C
07 31 3 6 26 w
08 47 2 0 17 W
09 52 0 1 13 A
10 25 0 1 40 w
11 17 15 11 23 w
12 19 8 20 19 d
13 7 0 57 2 G
14 2 0 54 10 G
15 22 17 5 22 h
16 45 4 5 12 A
17 40 6 9 11 a
18 15 10 16 25 t
Type: Heterodimer
Binding TFs: AG (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
P17839 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
Publications: Huang H., Mizukami Y., Hu Y., Ma H. Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS. Nucleic Acids Res. 21:4769-4776 (1993). [Pubmed]

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