footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

DNA Binding Motif

Accessions:	Fis (RegulonDB 7.5)
Names:	Fis
Organisms:	ECK12
Libraries:	RegulonDB 7.5 ¹ ¹ Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length:	15
Consensus:	GctyawwTtwtvadC
Weblogo:
PSSM:	P0 A C G T 01 0 10 166 35 G 02 46 61 52 52 c 03 49 51 36 75 t 04 31 61 38 81 y 05 133 15 48 15 a 06 81 22 16 92 w 07 61 16 18 116 w 08 0 5 5 201 T 09 46 25 27 113 t 10 63 18 15 115 w 11 29 47 11 124 t 12 71 64 59 17 v 13 92 40 41 38 a 14 54 48 55 54 d 15 13 178 3 17 C
Binding TFs:	ECK120004787 (Bacterial regulatory protein, Fis family)
Binding Sites:	ECK120011188 ECK120011253 ECK120011288 ECK120011290 ECK120011292 ECK120011531 ECK120011533 ECK120011541 ECK120011543 ECK120011545 ECK120011549 ECK120011551 ECK120011553 ECK120011616 ECK120011621 ECK120011623 ECK120011625 ECK120011660 ECK120011682 ECK120011684 ECK120011686 ECK120011688 ECK120011690 ECK120011692 ECK120011694 ECK120011703 ECK120011705 ECK120011707 ECK120011709 ECK120011711 ECK120011713 ECK120011715 ECK120011717 ECK120011719 ECK120011721 ECK120011723 ECK120011725 ECK120011727 ECK120011729 ECK120011731 ECK120011733 ECK120011735 ECK120011747 ECK120011749 ECK120011765 ECK120011775 ECK120011777 ECK120011802 ECK120011804 ECK120011816 ECK120011920 ECK120011922 ECK120011924 ECK120011926 ECK120011928 ECK120011930 ECK120011932 ECK120012060 ECK120012063 ECK120012066 ECK120012069 ECK120012072 ECK120012081 ECK120012083 ECK120012235 ECK120012692 ECK120012824 ECK120013101 ECK120013402 ECK120013582 ECK120013584 ECK120013586 ECK120013588 ECK120013596 ECK120013598 ECK120013600 ECK120013602 ECK120013604 ECK120013606 ECK120013608 ECK120013610 ECK120013612 ECK120013614 ECK120013616 ECK120013620 ECK120013622 ECK120013625 ECK120013627 ECK120013629 ECK120013631 ECK120013633 ECK120013635 ECK120013640 ECK120013670 ECK120013946 ECK120013948 ECK120013950 ECK120013952 ECK120013954 ECK120013957 ECK120013960 ECK120013963 ECK120014003 ECK120014005 ECK120014007 ECK120014018 ECK120014020 ECK120014022 ECK120014142 ECK120014144 ECK120014146 ECK120016199 ECK120016201 ECK120016203 ECK120016205 ECK120016538 ECK120019284 ECK120026396 ECK120029540 ECK120029542 ECK120029544 ECK120029546 ECK120029548 ECK120029550 ECK120029552 ECK120029555 ECK120029558 ECK120029561 ECK120029564 ECK120029567 ECK120029569 ECK120029571 ECK120029575 ECK120029577 ECK120029581 ECK120029583 ECK120029585 ECK120029587 ECK120030692 ECK120030695 ECK120030698 ECK120030701 ECK120030741 ECK120030742 ECK120030743 ECK120033952 ECK120033956 ECK120033958 ECK120033960 ECK120033962 ECK120033964 ECK120033966 ECK120033968 ECK120033970 ECK120033972 ECK120033974 ECK120033982 ECK120033984 ECK120033990 ECK120033992 ECK120033994 ECK120033996 ECK120033998 ECK120034000 ECK120034002 ECK120034004 ECK120034006 ECK120034008 ECK120034010 ECK120034012 ECK120034014 ECK120034016 ECK120034018 ECK120034020 ECK120034022 ECK120034024 ECK120034026 ECK120034028 ECK120034030 ECK120034032 ECK120034034 ECK120034036 ECK120034038 ECK120034040 ECK120034042 ECK120034044 ECK120034046 ECK120034048 ECK120034050 ECK120034052 ECK120034054 ECK120034056 ECK120034058 ECK120034060 ECK120034062 ECK120034064 ECK120034066 ECK120034068 ECK120034070 ECK120034072 ECK120034074 ECK120034076 ECK120034078 ECK120034080 ECK120034082 ECK120035012 ECK120035014 ECK120048786 ECK120048788 ECK120048790 ECK120051330 ECK120051340 ECK120051342 ECK120051420 ECK120051422 ECK120051424 ECK125108613 ECK125108615 ECK125134675
Publications:	Samsonova NN., Smirnov SV., Altman IB., Ptitsyn LR. Molecular cloning and characterization of Escherichia coli K12 ygjG gene. BMC Microbiol. 3(1):2 (2003). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.

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