DNA Binding Motif

Accessions: EEAD0012 (EEADannot 2023-12-22)
Names: ORE
Organisms: Fundulus heteroclitus
Libraries: EEADannot 2023-12-22 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 10
Consensus: sGGAAAAGyw
Weblogo:
PSSM: P0 A C G T
01 0.00 0.50 0.50 0.00 s
02 0.00 0.00 1.00 0.00 G
03 0.00 0.00 1.00 0.00 G
04 1.00 0.00 0.00 0.00 A
05 1.00 0.00 0.00 0.00 A
06 1.00 0.00 0.00 0.00 A
07 1.00 0.00 0.00 0.00 A
08 0.00 0.00 1.00 0.00 G
09 0.00 0.50 0.00 0.50 y
10 0.50 0.00 0.00 0.50 w
Binding TFs: unknown transcription factor
Binding Sites: ORE_1
ORE_2
Publications: López-Bojórquez L, Villalobos P, García-G C, Orozco A, Valverde-R C. Functional identification of an osmotic response element (ORE) in the promoter region of the killifish deiodinase 2 gene (FhDio2). J Exp Biol : (2007). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.