DNA Binding Motif

						

			
Accessions: 3cmy_A (3D-footprint 20231221)

			
Names: Paired box protein Pax-3
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of a homeodomain in complex with DNA
Length: 6
Consensus: GATTAT
Weblogo: 
PSSM: P0      A      C      G      T
01      6      6     75      9      G
02     75      6      9      6      A
03      0      0      0     96      T
04      6      6      9     75      T
05     89      1      6      0      A
06      6      6      9     75      T
Binding TFs: 3cmy_A (Homeobox domain, Homeobox KN domain)
Binding Sites: 3cmy_B
3cmy_C
			
Publications: Birrane G, Soni A, Ladias J.A. Structural basis for DNA recognition by the human PAX3 homeodomain. Biochemistry 48:1148-55 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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