DNA Binding Motif

						

			
Accessions: ANDR_MOUSE.H10MO.B|M01004 (HOCOMOCO 10)

			
Names: Ar
Organisms: Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: Steroid hormone receptors (NR3){2.1.1}; GR-like receptors (NR3C){2.1.1.1}
Length: 16
Consensus: rGwACAbrryGTkCyt
Weblogo: 
PSSM: P0      A      C      G      T
01     40      5     73     12      r
02      7      4    118      1      G
03     55      0     30     45      w
04     99      1     12     18      A
05      2    123      4      1      C
06     94      5     14     17      A
07     12     35     50     33      b
08     42     25     42     21      r
09     51     13     40     26      r
10     22     33      7     68      y
11      2      6    120      2      G
12     13      3     12    102      T
13     32      2     38     58      k
14     17    104      3      6      C
15     11     35      8     76      y
16     32     16     25     57      t
Binding TFs: ANDR_MOUSE (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), Androgen receptor)
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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