DNA Binding Motif

						

			
Accessions: MA1327.1 (JASPAR 2024), M0851 (AthalianaCistrome v4_May2016)

			
Names: ATHB-23, ATHB23, ATHB23.DAP, T22039;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 22
Consensus: wwwhwTAATTARtwawwwawww
Weblogo: 
PSSM: P0      A      C      G      T
01    364     22     33    180      w
02    318     43     52    186      w
03    201     64     94    240      w
04    164    167    117    151      h
05    183     89    105    222      w
06     26     16     13    544      T
07    455      1    143      0      A
08    593      0      0      6      A
09      0      0      0    599      T
10      0      0      0    599      T
11    599      0      0      0      A
12    423     19    155      2      R
13     73    101    123    302      t
14    157     62    146    234      w
15    300     46    124    129      a
16    227    104     89    179      w
17    156     71     78    294      w
18    252     37     67    243      w
19    373     21     71    134      a
20    294     44     50    211      w
21    165     32     31    371      w
22    235     33     47    284      w
Binding TFs: T22039 (ZF-HD protein dimerisation region)
Binding Sites: MA1327.1.1
MA1327.1.10
MA1327.1.11
MA1327.1.12
MA1327.1.13
MA1327.1.14
MA1327.1.15
MA1327.1.16
MA1327.1.17
MA1327.1.18
MA1327.1.19
MA1327.1.2
MA1327.1.20
MA1327.1.3
MA1327.1.4
MA1327.1.5
MA1327.1.6
MA1327.1.7
MA1327.1.8
MA1327.1.9
			
Publications: Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.