DNA Binding Motif

						

			
Accessions: POL004.1 (JASPAR 2024)

			
Names: CCAAT-box
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 12
Consensus: hyyrrCCAATsr
Weblogo: 
PSSM: P0      A      C      G      T
01     56     55     12     52      h
02     32     52     43     48      y
03     25     47     24     79      y
04    102      1     70      2      r
05     51      6     99     19      r
06      0    173      1      1      C
07      0    174      0      1      C
08    175      0      0      0      A
09    119      8     21     27      A
10     17      0     15    143      T
11     23     90     59      3      s
12    116      6     52      1      r
			
Publications: Bucher P. Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences. J. Mol. Biol. 212:563-578 (1990). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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