DNA Binding Motif

						

			
Accessions: MA1374.1 (JASPAR 2024), M0313 (AthalianaCistrome v4_May2016)

			
Names: IDD7, IDD7.DAP, T02300;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 18
Consensus: mrsAAAAcGACAAAAawa
Weblogo: 
PSSM: P0      A      C      G      T
01    190    232     44    119      m
02    394     20    153     18      r
03     95    224    197     69      s
04    400      3     36    146      A
05    489      1      0     95      A
06    424     49     88     24      A
07    528     31     23      3      A
08    136    375     57     17      c
09      2      0    583      0      G
10    575      9      0      1      A
11      0    585      0      0      C
12    574      0     11      0      A
13    576      2      6      1      A
14    540     11     29      5      A
15    441     25     39     80      A
16    293     89     66    137      a
17    267     77     62    179      w
18    244     95    108    138      a
Type: Heterodimer
Binding TFs: Q8H1F5 / T02300 (Zinc finger, C2H2 type, Zinc-finger double-stranded RNA-binding, C2H2-type zinc finger)
Q8H1F5
Binding Sites: MA1374.1.1
MA1374.1.10
MA1374.1.11
MA1374.1.12
MA1374.1.13
MA1374.1.14
MA1374.1.15
MA1374.1.16
MA1374.1.17
MA1374.1.18
MA1374.1.19
MA1374.1.2
MA1374.1.20
MA1374.1.3
MA1374.1.4
MA1374.1.5
MA1374.1.6
MA1374.1.7
MA1374.1.8
MA1374.1.9
			
Publications: Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.