DNA Binding Motif

Accessions: MA0341.1 (JASPAR 2024)
Names: MSN2
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM, CSA and/or DIP-chip
Length: 5
Consensus: rGGGG
Weblogo:
PSSM: P0 A C G T
01 60 7 32 0 r
02 0 0 100 0 G
03 0 0 100 0 G
04 0 0 100 0 G
05 0 0 100 0 G
Type: Heterodimer
Binding TFs: P33748 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
P33748
Publications: Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed]

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