DNA Binding Motif

Accessions: 1ga5_F (3D-footprint 20231221)
Names: ORPHAN NUCLEAR RECEPTOR NR1D1
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT
Length: 5
Consensus: tGaCC
Weblogo:
PSSM: P0 A C G T
01 16 13 13 54 t
02 0 0 96 0 G
03 54 13 13 16 a
04 0 96 0 0 C
05 0 96 0 0 C
Binding TFs: 1ga5_F (Zinc finger, C4 type (two domains))
Binding Sites: 1ga5_G
1ga5_H
Publications: Sierk M.L, Zhao Q, Rastinejad F. DNA deformability as a recognition feature in the reverb response element. Biochemistry 40:12833-43 (2001). [Pubmed]

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