DNA Binding Motif

						

			
Accessions: M0424 (AthalianaCistrome v4_May2016)

			
Names: 3XHMGBOX1.DAP, T19595;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 21
Consensus: rCGGCGGhGrwgrmggcrrwg
Weblogo: 
PSSM: P0      A      C      G      T
01    161     74    122     39      r
02     44    274      0     78      C
03      0      0    391      5      G
04     46      0    350      0      G
05     31    282      0     83      C
06      0      0    386     10      G
07     54      0    331     11      G
08    140    129     17    110      h
09     38      1    285     72      G
10    134     49    172     41      r
11    162     68     22    144      w
12     94     33    179     90      g
13    102     58    170     66      r
14    100    127     75     94      m
15     67     51    224     54      g
16     74     69    216     37      g
17     90    131     88     87      c
18    105     40    210     41      r
19    100     47    189     60      r
20    122     98     62    114      w
21     73     31    199     93      g
Binding TFs: T19595 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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