DNA Binding Motif

Accessions: 1rcs_AB (3D-footprint 2022-04-03)
Names: TRP REPRESSOR
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 2022-04-03 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: NMR STUDY OF TRP REPRESSOR-OPERATOR DNA COMPLEX
Length: 18
Consensus: GTACnAGnnnnCTaGTAC
Weblogo:
PSSM: P0 A C G T
01 0 0 96 0 G
02 0 0 0 96 T
03 86 1 9 0 A
04 0 96 0 0 C
05 24 24 24 24 n
06 96 0 0 0 A
07 11 9 67 9 G
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 24 24 24 24 n
12 9 67 9 11 C
13 7 4 4 81 T
14 57 9 16 14 a
15 0 0 96 0 G
16 0 4 1 91 T
17 96 0 0 0 A
18 0 96 0 0 C
Binding TFs: 1rcs_A / 1rcs_B (Trp repressor protein)
Binding Sites: 1rcs_E / 1rcs_F
Publications: Zhang H, Zhao D, Revington M, Lee W, Jia X, Arrowsmith C, Jardetzky O. The solution structures of the trp repressor-operator DNA complex. Journal of molecular biology 238:592-614 (1994). [Pubmed]

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