DNA Binding Motif

						

			
Accessions: PerR (DBTBS 1.0)

			
Names: PerR
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Length: 15
Consensus: TTrkAATkATTATAA
Weblogo: 
PSSM: P0      A      C      G      T
01      0   0.18      0   0.82      T
02      0      0   0.18   0.82      T
03   0.65      0   0.35      0      r
04      0      0   0.35   0.65      k
05      1      0      0      0      A
06      1      0      0      0      A
07      0      0      0      1      T
08      0      0   0.47   0.53      k
09   0.78      0      0   0.22      A
10      0      0      0      1      T
11      0      0      0      1      T
12      1      0      0      0      A
13      0      0      0      1      T
14   0.73   0.18      0   0.08      A
15   0.82      0   0.18      0      A
Binding TFs: PerR (Ferric uptake regulator family)
Binding Sites: ahpC_1
fur_1
hemA_1
hemA_2
katA
mrgA_1
perR_1
perR_2
srfAA_4
yjbD_1
ykvW_1
			
Publications: Herbig A.F, Helmann J.D. Roles of metal ions and hydrogen peroxide in modulating the interaction of the Bacillus subtilis PerR peroxide regulon repressor with operator DNA. Molecular microbiology 41:849-59 (2001). [Pubmed]


Fuangthong M, Herbig A.F, Bsat N, Helmann J.D. Regulation of the Bacillus subtilis fur and perR genes by PerR: not all members of the PerR regulon are peroxide inducible. Journal of bacteriology 184:3276-86 (2002). [Pubmed]


Engelmann S, Lindner C, Hecker M. Cloning, nucleotide sequence, and regulation of katE encoding a sigma B-dependent catalase in Bacillus subtilis. Journal of bacteriology 177:5598-605 (1995). [Pubmed]


Bol D.K, Yasbin R.E. Analysis of the dual regulatory mechanisms controlling expression of the vegetative catalase gene of Bacillus subtilis. Journal of bacteriology 176:6744-8 (1994). [Pubmed]


Hayashi K, Ohsawa T, Kobayashi K, Ogasawara N, Ogura M. The H2O2 stress-responsive regulator PerR positively regulates srfA expression in Bacillus subtilis. Journal of bacteriology 187:6659-67 (2005). [Pubmed]


Gaballa A, Wang T, Ye R.W, Helmann J.D. Functional analysis of the Bacillus subtilis Zur regulon. Journal of bacteriology 184:6508-14 (2002). [Pubmed]


Leelakriangsak M, Kobayashi K, Zuber P. Dual negative control of spx transcription initiation from the P3 promoter by repressors PerR and YodB in Bacillus subtilis. Journal of bacteriology 189:1736-44 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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