DNA Binding Motif

Accessions: MA1265.1 (JASPAR 2024), M0070 (AthalianaCistrome v4_May2016)
Names: AT4G31060, ERF015, At4g31060.DAP, T18078;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 20
Consensus: cCACCGaCAmhwyyrccrmm
Weblogo:
PSSM: P0 A C G T
01 37 362 56 138 c
02 10 562 0 21 C
03 494 0 93 6 A
04 0 593 0 0 C
05 0 593 0 0 C
06 0 0 593 0 G
07 387 103 5 98 a
08 0 593 0 0 C
09 427 7 122 37 A
10 221 197 75 100 m
11 222 173 34 164 h
12 203 61 147 182 w
13 137 217 83 156 y
14 113 285 38 157 y
15 191 95 175 132 r
16 144 208 95 146 c
17 107 277 78 131 c
18 181 113 170 129 r
19 153 193 100 147 m
20 149 232 82 130 m
Type: Heterodimer
Binding TFs: Q6NLD5 / T18078 (AP2 domain)
Q6NLD5
Binding Sites: MA1265.1.1
MA1265.1.10
MA1265.1.11
MA1265.1.12
MA1265.1.13
MA1265.1.14
MA1265.1.15
MA1265.1.16
MA1265.1.17
MA1265.1.18
MA1265.1.19
MA1265.1.2
MA1265.1.20
MA1265.1.3
MA1265.1.4
MA1265.1.5
MA1265.1.6
MA1265.1.7
MA1265.1.8
MA1265.1.9
Publications: Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.