DNA Binding Motif

Accessions: 4egz_B (3D-footprint 20231221)
Names: Arabinose metabolism transcriptional repressor
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of AraR(DBD) in complex with operator ORR3
Length: 7
Consensus: TnnACAT
Weblogo:
PSSM: P0 A C G T
01 9 9 9 69 T
02 24 24 24 24 n
03 24 24 24 24 n
04 67 9 9 11 A
05 0 96 0 0 C
06 96 0 0 0 A
07 9 9 9 69 T
Binding TFs: 4egz_B (Bacterial regulatory proteins, gntR family, DeoR-like helix-turn-helix domain, HTH domain)
Binding Sites: 4egz_T
4egz_U
Publications: Jain D, Nair D.T. Spacing between core recognition motifs determines relative orientation of AraR monomers on bipartite operators. Nucleic acids research 41:639-47 (2013). [Pubmed]

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