DNA Binding Motif

						

			
Accessions: AraR (DBTBS 1.0)

			
Names: AraR
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Length: 16
Consensus: AWWtGTwCGTACwwaT
Weblogo: 
PSSM: P0      A      C      G      T
01      1      0      0      0      A
02   0.28      0      0   0.72      W
03   0.28      0      0   0.72      W
04   0.11   0.22      0   0.67      t
05   0.08      0   0.92      0      G
06      0      0      0      1      T
07   0.53   0.22      0   0.25      w
08      0      1      0      0      C
09      0      0      1      0      G
10      0      0      0      1      T
11      1      0      0      0      A
12      0   0.80      0   0.20      C
13   0.53   0.22      0   0.25      w
14   0.39   0.22      0   0.39      w
15   0.67      0   0.22   0.11      a
16   0.12      0      0   0.88      T
Binding TFs: AraR (Bacterial regulatory proteins, gntR family, Periplasmic binding proteins and sugar binding domain of LacI family, DeoR-like helix-turn-helix domain, HTH domain, Periplasmic binding protein-like domain, Periplasmic binding protein domain)
Binding Sites: abnA_1
araA_1
araA_2
araE_1
araE_2
araR_1
xsa_1
xsa_2
			
Publications: Raposo M.P, Inácio J.M, Mota L.J, de Sá-Nogueira I. Transcriptional regulation of genes encoding arabinan-degrading enzymes in Bacillus subtilis. Journal of bacteriology 186:1287-96 (2004). [Pubmed]


Sá-Nogueira I, Mota L.J. Negative regulation of L-arabinose metabolism in Bacillus subtilis: characterization of the araR (araC) gene. Journal of bacteriology 179:1598-608 (1997). [Pubmed]


Mota L.J, Tavares P, Sá-Nogueira I. Mode of action of AraR, the key regulator of L-arabinose metabolism in Bacillus subtilis. Molecular microbiology 33:476-89 (1999). [Pubmed]


Sá-Nogueira I, Ramos S.S. Cloning, functional analysis, and transcriptional regulation of the Bacillus subtilis araE gene involved in L-arabinose utilization. Journal of bacteriology 179:7705-11 (1997). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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