DNA Binding Motif

						

			
Accessions: UP00059A_2 (UniPROBE 20160601)

			
Names: Arid5a, AT rich interactive domain 5A (Mrf1 like), D430024K22Rik, MGC36895
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: brydmaATACGrrabra
Weblogo: 
PSSM: P0      A      C      G      T
01   0.17   0.30   0.27   0.25      b
02   0.30   0.17   0.30   0.23      r
03   0.14   0.27   0.09   0.50      y
04   0.28   0.19   0.25   0.27      d
05   0.28   0.36   0.18   0.17      m
06   0.67   0.06   0.06   0.21      a
07   0.83   0.07   0.05   0.04      A
08   0.04   0.05   0.10   0.81      T
09   0.78   0.12   0.06   0.04      A
10   0.09   0.74   0.15   0.02      C
11   0.12   0.18   0.69   0.01      G
12   0.53   0.06   0.26   0.14      r
13   0.41   0.10   0.29   0.21      r
14   0.43   0.14   0.19   0.24      a
15   0.15   0.28   0.25   0.32      b
16   0.35   0.20   0.28   0.17      r
17   0.44   0.21   0.21   0.13      a
Binding TFs: UP00059A (ARID/BRIGHT DNA binding domain)
Binding Sites: AAATATTA
AAATATTG
AATATCGT
AATATTAA
AATATTAG
AATATTAT
AATATTGA
AATATTGC
AATATTGG
AATATTTC
ATATTAAG
ATATTATA
ATATTATG
CAATATCA
CAATATTA
CAATATTG
CGATATTA
GATATTAA
TAATATCA
AATATTGT
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.