DNA Binding Motif
Accessions: | MA1106.1 (JASPAR 2024) |
Names: | HIF1A |
Organisms: | Homo sapiens, Oryctolagus cuniculus, Rattus rattus |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | ChIP-seq |
Length: | 10 |
Consensus: | gbACGTGCss |
Weblogo: | |
PSSM: | P0 A C G T 01 197 229 414 140 g 02 105 270 263 342 b 03 976 0 2 2 A 04 0 979 0 1 C 05 1 0 979 0 G 06 2 33 11 934 T 07 84 41 844 11 G 08 88 837 20 35 C 09 206 290 257 227 s 10 164 315 271 230 s |
Type: | Heterodimer |
Binding TFs: | Q16665 (PAS fold, PAS fold, HIF-1 alpha C terminal transactivation domain, Hypoxia-inducible factor-1, PAS domain) Q16665 |
Binding Sites: | MA1106.1.1 MA1106.1.10 MA1106.1.11 MA1106.1.12 MA1106.1.13 MA1106.1.14 MA1106.1.15 MA1106.1.16 MA1106.1.17 MA1106.1.18 / MA1106.1.4 MA1106.1.19 MA1106.1.2 MA1106.1.20 MA1106.1.3 MA1106.1.5 MA1106.1.6 MA1106.1.7 MA1106.1.8 MA1106.1.9 |
Publications: | Ortiz-Barahona A, Villar D, Pescador N, Amigo J, del Peso L. Genome-wide identification of hypoxia-inducible factor binding sites and target genes by a probabilistic model integrating transcription-profiling data and in silico binding site prediction. Nucleic Acids Res 38:2332-45 (2010). [Pubmed] |
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