DNA Binding Motif

Accessions: 6mzm_ABTW (3D-footprint 20210203)
Names: TATA-box-binding protein
Organisms: Homo sapiens
Libraries: 3D-footprint 20210203 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Human TFIID bound to promoter DNA and TFIIA
Length: 61
Consensus: TATAAAAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCnnnCnGA
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 96 0 0 0 A
03 0 0 0 96 T
04 96 0 0 0 A
05 96 0 0 0 A
06 96 0 0 0 A
07 96 0 0 0 A
08 0 0 96 0 G
09 24 24 24 24 n
10 24 24 24 24 n
11 24 24 24 24 n
12 24 24 24 24 n
13 24 24 24 24 n
14 24 24 24 24 n
15 24 24 24 24 n
16 24 24 24 24 n
17 24 24 24 24 n
18 24 24 24 24 n
19 24 24 24 24 n
20 24 24 24 24 n
21 24 24 24 24 n
22 24 24 24 24 n
23 24 24 24 24 n
24 24 24 24 24 n
25 24 24 24 24 n
26 24 24 24 24 n
27 24 24 24 24 n
28 24 24 24 24 n
29 24 24 24 24 n
30 24 24 24 24 n
31 24 24 24 24 n
32 24 24 24 24 n
33 24 24 24 24 n
34 24 24 24 24 n
35 24 24 24 24 n
36 24 24 24 24 n
37 24 24 24 24 n
38 24 24 24 24 n
39 24 24 24 24 n
40 24 24 24 24 n
41 24 24 24 24 n
42 24 24 24 24 n
43 24 24 24 24 n
44 24 24 24 24 n
45 24 24 24 24 n
46 24 24 24 24 n
47 24 24 24 24 n
48 24 24 24 24 n
49 24 24 24 24 n
50 24 24 24 24 n
51 24 24 24 24 n
52 24 24 24 24 n
53 24 24 24 24 n
54 9 67 11 9 C
55 24 24 24 24 n
56 24 24 24 24 n
57 24 24 24 24 n
58 11 67 9 9 C
59 24 24 24 24 n
60 11 9 67 9 G
61 96 0 0 0 A
Binding TFs: 6mzm_T (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 6mzm_V
6mzm_U
Publications: Patel AB, Louder RK, Greber BJ, Gr├╝nberg S, Luo J, Fang J, Liu Y, Ranish J, Hahn S, Nogales E. Structure of human TFIID and mechanism of TBP loading onto promoter DNA. Science : (2018). [Pubmed]

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