DNA Binding Motif

Accessions: MA1204.1 (JASPAR 2018)
Names: AGL13
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 [Pubmed]
Notes: DAP-seq
Length: 18
Consensus: WTwCYaAAAAwrGwAAaw
Weblogo:
PSSM: P0 A C G T
01 59 3 0 157 W
02 9 0 2 208 T
03 123 2 25 69 w
04 2 217 0 0 C
05 0 161 0 58 Y
06 141 36 7 35 a
07 169 2 7 41 A
08 219 0 0 0 A
09 174 0 0 45 A
10 174 8 6 31 A
11 81 12 15 111 w
12 74 0 145 0 r
13 0 0 217 2 G
14 120 15 5 79 w
15 209 3 0 7 A
16 191 0 4 24 A
17 126 14 41 38 a
18 90 19 20 90 w
Binding TFs: Q38837 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
Publications: Tang W., Perry S. E. Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.. J. Biol. Chem. 278:28154-28159 (2003). [Pubmed]

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