DNA Binding Motif
| Accessions: | MA0126.1 (JASPAR 2024), MA0239.1 (JASPAR 2024) |
| Names: | ovo, prd |
| Organisms: | Drosophila melanogaster |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | SELEX, bacterial 1-hybrid |
| Length: | 9 |
| Consensus: | wgtAACwGt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 10 4 0 7 w 02 1 4 14 2 g 03 4 2 2 13 t 04 20 0 0 1 A 05 21 0 0 0 A 06 0 21 0 0 C 07 7 5 3 6 w 08 0 0 21 0 G 09 5 4 2 10 t |
| Type: | Heterodimer |
| Binding TFs: | P23758 ('Paired box' domain) P51521 (Zinc finger, C2H2 type, Zinc-finger double domain) P23758 P51521 |
| Binding Sites: | MA0126.1.1 MA0126.1.10 MA0126.1.11 MA0126.1.12 MA0126.1.13 MA0126.1.14 MA0126.1.15 MA0126.1.16 MA0126.1.17 MA0126.1.18 MA0126.1.19 MA0126.1.2 MA0126.1.20 MA0126.1.3 MA0126.1.4 MA0126.1.5 MA0126.1.6 MA0126.1.7 MA0126.1.8 MA0126.1.9 MA0239.1.1 MA0239.1.10 MA0239.1.11 MA0239.1.12 MA0239.1.13 MA0239.1.14 MA0239.1.15 MA0239.1.16 MA0239.1.17 MA0239.1.18 MA0239.1.19 MA0239.1.2 MA0239.1.20 MA0239.1.3 MA0239.1.4 MA0239.1.5 MA0239.1.6 MA0239.1.7 MA0239.1.8 MA0239.1.9 |
| Publications: | Lee S., Garfinkel M. D. Characterization of Drosophila OVO protein DNA binding specificity using random DNA oligomer selection suggests zinc finger degeneration.. Nucleic Acids Res. 28:826-834 (2000). [Pubmed] Meng X, Brodsky M.H, Wolfe S.A. A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors. Nature biotechnology 23:988-94 (2005). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.