DNA Binding Motif

Accessions: 6pmi_F (3D-footprint 20231221)
Names: RNA polymerase sigma factor FliA
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Sigm28-transcription initiation complex with specific promoter at the state 1
Length: 14
Consensus: TgnGATaACGAGAT
Weblogo:
PSSM: P0 A C G T
01 8 11 8 69 T
02 8 8 61 19 g
03 24 24 24 24 n
04 0 0 96 0 G
05 96 0 0 0 A
06 0 0 0 96 T
07 61 19 8 8 a
08 96 0 0 0 A
09 0 96 0 0 C
10 0 0 96 0 G
11 96 0 0 0 A
12 0 0 96 0 G
13 96 0 0 0 A
14 0 0 0 96 T
Binding TFs: 6pmi_F (Sigma-70 region 3, Sigma-70 region 2 , Sigma-70, region 4, Sigma-70, region 4)
Binding Sites: 6pmi_1
6pmi_2
Publications: Shi W, Zhou W, Zhang B, Huang S, Jiang Y, Schammel A, Hu Y, Liu B. Structural basis of bacterial σ(28) -mediated transcription reveals roles of the RNA polymerase zinc-binding domain. EMBO J : (2020). [Pubmed]

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