DNA Binding Motif

						

			
Accessions: MA0557.1 (JASPAR 2024)

			
Names: FHY3
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 12
Consensus: ywCACGCGCThw
Weblogo: 
PSSM: P0      A      C      G      T
01     46     81     40     68      y
02     75     58     25     77      w
03      9    210      9      7      C
04    226      3      2      4      A
05      2    230      1      2      C
06      3     16    213      3      G
07      0    220      0     15      C
08      4      0    228      3      G
09     18    208      6      3      C
10     16     40     17    162      T
11     63     68     40     64      h
12     82     44     50     59      w
Type: Heterodimer
Binding TFs: Q9LIE5 (FAR1 DNA-binding domain, MULE transposase domain)
Q9LIE5
			
Publications: Ouyang X, Li J, Li G, Li B, Chen B, Shen H, Huang X, Mo X, Wan X, Lin R, Li S, Wang H, Deng X.W. Genome-wide binding site analysis of FAR-RED ELONGATED HYPOCOTYL3 reveals its novel function in Arabidopsis development. The Plant cell 23:2514-35 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.