DNA Binding Motif

						

			
Accessions: MA0109.1 (JASPAR 2024), UN0669.1 (JASPAR 2024)

			
Names: HLTF
Organisms: Oryctolagus cuniculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX, CASTing
Length: 10
Consensus: wwmCwTwkvt
Weblogo: 
PSSM: P0      A      C      G      T
01     16     10     12     13      w
02     20     12      5     16      w
03     26     33      0      0      m
04      0     59      0      0      C
05     25      0      0     34      w
06      0      0      0     59      T
07     24      5     12     18      w
08      0      0     22     37      k
09     15     14     14      8      v
10     12     12     10     15      t
Binding TFs: Q95216 (Zinc finger, C3HC4 type (RING finger), SNF2 family N-terminal domain, Helicase conserved C-terminal domain, HIRAN domain, Ring finger domain, Zinc finger, C3HC4 type (RING finger))
			
Publications: Hewetson A, Hendrix E.C, Mansharamani M, Lee V.H, Chilton B.S. Identification of the RUSH consensus-binding site by cyclic amplification and selection of targets: demonstration that RUSH mediates the ability of prolactin to augment progesterone-dependent gene expression. Molecular endocrinology (Baltimore, Md.) 16:2101-12 (2002). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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