DNA Binding Motif

						

			
Accessions: 4p9u_F (3D-footprint 20231221)

			
Names: Fatty acid metabolism regulator protein
Organisms: strain ATCC 39315 / El Tor Inaba N16961, Vibrio cholerae serotype O1
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: FadR, Fatty Acid Responsive Transcription Factor from Vibrio cholerae, in Complex with DNA
Length: 6
Consensus: TnaCCa
Weblogo: 
PSSM: P0      A      C      G      T
01      0     17     10     69      T
02     24     24     24     24      n
03     54     17      8     17      a
04      0     96      0      0      C
05      0     96      0      0      C
06     52     17     19      8      a
Binding TFs: 4p9u_F (Bacterial regulatory proteins, gntR family, FadR C-terminal domain)
Binding Sites: 4p9u_G
4p9u_H
			
Publications: Shi W, Kovacikova G, Lin W, Taylor R.K, Skorupski K, Kull F.J. The 40-residue insertion in Vibrio cholerae FadR facilitates binding of an additional fatty acyl-CoA ligand. Nature communications 6:6032 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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