DNA Binding Motif

Accessions: MA0465.1 (JASPAR 2024)
Names: CDX2
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: rdGymATAAAa
Weblogo:
PSSM: P0 A C G T
01 613 319 480 185 r
02 665 8 502 422 d
03 308 136 1153 0 G
04 0 1048 0 549 y
05 697 832 0 68 m
06 1597 0 0 0 A
07 0 0 0 1597 T
08 1597 0 0 0 A
09 1597 0 0 0 A
10 1597 0 0 0 A
11 1013 150 313 121 a
Type: Heterodimer
Binding TFs: Q99626 (Homeobox domain, Caudal like protein activation region)
Q99626
Binding Sites: MA0465.1.1
MA0465.1.10
MA0465.1.11
MA0465.1.12
MA0465.1.13
MA0465.1.14
MA0465.1.15
MA0465.1.16
MA0465.1.17
MA0465.1.18
MA0465.1.19
MA0465.1.2
MA0465.1.20
MA0465.1.3
MA0465.1.4
MA0465.1.5
MA0465.1.6
MA0465.1.7
MA0465.1.8
MA0465.1.9
Publications: Verzi M.P, Hatzis P, Sulahian R, Philips J, Schuijers J, Shin H, Freed E, Lynch J.P, Dang D.T, Brown M, Clevers H, Liu X.S, Shivdasani R.A. TCF4 and CDX2, major transcription factors for intestinal function, converge on the same cis-regulatory regions. Proceedings of the National Academy of Sciences of the United States of America 107:15157-62 (2010). [Pubmed]

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