DNA Binding Motif

Accessions: CN0044.1 (JASPAR 2024)
Names: LM44
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 19
Consensus: gtGTAATTGgAAACAGCTG
Weblogo:
PSSM: P0 A C G T
01 46 29 127 42 g
02 47 9 35 153 t
03 13 27 174 30 G
04 18 25 32 169 T
05 204 9 20 11 A
06 235 0 4 5 A
07 20 11 19 194 T
08 4 1 30 209 T
09 23 4 207 10 G
10 39 27 164 14 g
11 206 14 11 13 A
12 217 10 11 6 A
13 185 22 36 1 A
14 14 215 8 7 C
15 232 1 3 8 A
16 2 3 206 33 G
17 19 196 17 12 C
18 24 4 1 215 T
19 1 3 231 9 G
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

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