DNA Binding Motif

Accessions: 5yzz_C (3D-footprint 20231221)
Names: B3 domain-containing transcription repressor VAL1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: AtVAL1 B3 domain in complex with 13bp-DNA
Length: 6
Consensus: CATGCa
Weblogo:
PSSM: P0 A C G T
01 9 67 9 11 C
02 87 3 3 3 A
03 7 7 7 75 T
04 0 0 96 0 G
05 7 75 7 7 C
06 52 14 16 14 a
Binding TFs: 5yzz_C (B3 DNA binding domain)
Binding Sites: 5yzz_A
5yzz_B
Publications: Wu B, Zhang M, Su S, Liu H, Gan J, Ma J. Structural insight into the role of VAL1 B3 domain for targeting to FLC locus in Arabidopsis thaliana. Biochem Biophys Res Commun 501:415-422 (2018). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.