DNA Binding Motif

						

			
Accessions: MA1031.1 (JASPAR 2024)

			
Names: OJ1581_H09.2
Organisms: Oryza sativa, Oryza sativa Japonica Group
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 10
Consensus: kkGGgcCCmm
Weblogo: 
PSSM: P0      A      C      G      T
01    175    131    414    279      k
02     74    146    335    445      k
03      0      0    929     71      G
04      0      0   1000      0      G
05    127    101    661    112      g
06    112    661    101    127      c
07      0   1000      0      0      C
08     71    929      0      0      C
09    445    335    146     74      m
10    279    414    131    175      m
Type: Heterodimer
Binding TFs: Q6H878 (TCP family transcription factor)
Q6H878
			
Publications: Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.