DNA Binding Motif
| Accessions: | pnr (DrosophilaTF 1.1) |
| Names: | pnr |
| Organisms: | Drosophila melanogaster |
| Libraries: | DrosophilaTF 1.1 1 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] |
| Length: | 18 |
| Consensus: | AthkkshGATAAgsrgvb |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1 0 0 0 A 02 0.2 0.2 0.2 0.4 t 03 0.3333 0.2525 0.0808 0.3333 h 04 0.202 0.1313 0.3333 0.3333 k 05 0.2 0.13 0.27 0.4 k 06 0.1111 0.3333 0.3333 0.2222 s 07 0.26 0.32 0 0.42 h 08 0 0 1 0 G 09 1 0 0 0 A 10 0 0 0 1 T 11 1 0 0 0 A 12 0.703 0.099 0.099 0.099 A 13 0 0.21 0.63 0.16 g 14 0.13 0.31 0.5 0.06 s 15 0.33 0.07 0.4 0.2 r 16 0.23 0.23 0.31 0.23 g 17 0.25 0.25 0.33 0.17 v 18 0.08 0.25 0.25 0.42 b |
| Binding TFs: | pnr (GATA zinc finger) |
| Binding Sites: | pnr_1 pnr_10 pnr_11-12 pnr_13 pnr_14 pnr_15 / pnr_16 pnr_17 pnr_18 pnr_19 pnr_2-3 pnr_20 pnr_21 pnr_22 pnr_23 pnr_24 pnr_25 pnr_26 pnr_27 pnr_28 pnr_29 pnr_30 pnr_31 pnr_4 pnr_5 pnr_6 pnr_7 pnr_8 pnr_9 |
| Publications: | Haenlin M, Cubadda Y, Blondeau F, Heitzler P, Lutz Y, Simpson P, Ramain P. Transcriptional activity of pannier is regulated negatively by heterodimerization of the GATA DNA-binding domain with a cofactor encoded by the u-shaped gene of Drosophila. Genes & development 11:3096-108 (1997). [Pubmed] |
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