DNA Binding Motif

						

			
Accessions: 1cit_A (3D-footprint 20231221)

			
Names: PROTEIN (ORPHAN NUCLEAR RECEPTOR NGFI-B)
Organisms: Rattus norvegicus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: DNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPTOR NGFI-B
Length: 9
Consensus: TGACCTnTT
Weblogo: 
PSSM: P0      A      C      G      T
01      7      7      7     75      T
02      7      7     73      9      G
03     73      7      9      7      A
04      0     96      0      0      C
05      0     96      0      0      C
06      0      0      0     96      T
07     24     24     24     24      n
08      7      7      7     75      T
09      0      0      0     96      T
Binding TFs: 1cit_A (Zinc finger, C4 type (two domains))
Binding Sites: 1cit_B
1cit_C
			
Publications: Meinke G, Sigler P.B. DNA-binding mechanism of the monomeric orphan nuclear receptor NGFI-B. Nature structural biology 6:471-7 (1999). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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