DNA Binding Motif

Accessions: 6jnn_AN (3D-footprint 20231221)
Names: Lysine-specific demethylase REF6
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: REF6 ZnF2-4-NAC004-mC1 complex
Length: 16
Consensus: AywGAknnnnTCTGTA
Weblogo:
PSSM: P0 A C G T
01 96 0 0 0 A
02 0 41 0 55 y
03 46 10 10 30 w
04 5 0 90 1 G
05 96 0 0 0 A
06 10 13 43 30 k
07 24 24 24 24 n
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 0 0 0 96 T
12 8 76 2 10 C
13 0 0 0 96 T
14 0 0 96 0 G
15 0 0 0 96 T
16 74 0 1 21 A
Binding TFs: 6jnn_A / 6jnn_N (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 6jnn_H
6jnn_I
Publications: Qiu Q, Mei H, Deng X, He K, Wu B, Yao Q, Zhang J, Lu F, Ma J, Cao X. DNA methylation repels targeting of Arabidopsis REF6. Nat Commun 10:2063 (2019). [Pubmed]

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