DNA Binding Motif

						

			
Accessions: 1jt0_ABCD (3D-footprint 20231221)

			
Names: HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5'REGION
Organisms: Staphylococcus aureus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of a cooperative QacR-DNA complex
Length: 22
Consensus: ATngACCnATCGAnnGGTcTAT
Weblogo: 
PSSM: P0      A      C      G      T
01     92      3      0      1      A
02      0      1      1     94      T
03     24     24     24     24      n
04     15     11     59     11      g
05     96      0      0      0      A
06      0     96      0      0      C
07      0     96      0      0      C
08     24     24     24     24      n
09     82      1      3     10      A
10      0      0      0     96      T
11      0     96      0      0      C
12      0      0     96      0      G
13     96      0      0      0      A
14     24     24     24     24      n
15     24     24     24     24      n
16      0      0     96      0      G
17      0      0     96      0      G
18      0      0      0     96      T
19     19     46     17     14      c
20      9     13      7     67      T
21     96      0      0      0      A
22      1      1      4     90      T
Type: Heterodimer
Binding TFs: 1jt0_A / 1jt0_B / 1jt0_C (Bacterial regulatory proteins, tetR family, QacR-like protein, C-terminal region)
1jt0_D (Bacterial regulatory proteins, tetR family, QacR-like protein, C-terminal region)
Binding Sites: 1jt0_E / 1jt0_F
			
Publications: Schumacher M.A, Miller M.C, Grkovic S, Brown M.H, Skurray R.A, Brennan R.G. Structural basis for cooperative DNA binding by two dimers of the multidrug-binding protein QacR. The EMBO journal 21:1210-8 (2002). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.