DNA Binding Motif

Accessions: 1tf3_A (3D-footprint 20231221)
Names: TRANSCRIPTION FACTOR IIIA
Organisms: Xenopus laevis
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: TFIIIA FINGER 1-3 BOUND TO DNA, NMR, 22 STRUCTURES
Length: 12
Consensus: TGkATGGGAGAm
Weblogo:
PSSM: P0 A C G T
01 3 11 10 72 T
02 0 0 96 0 G
03 0 5 65 26 k
04 96 0 0 0 A
05 0 0 0 96 T
06 0 0 96 0 G
07 0 0 96 0 G
08 0 0 96 0 G
09 75 3 11 7 A
10 0 0 96 0 G
11 72 7 3 14 A
12 30 53 3 10 m
Binding TFs: 1tf3_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 1tf3_E
1tf3_F
Publications: Foster M.P, Wuttke D.S, Radhakrishnan I, Case D.A, Gottesfeld J.M, Wright P.E. Domain packing and dynamics in the DNA complex of the N-terminal zinc fingers of TFIIIA. Nature structural biology 4:605-8 (1997). [Pubmed]

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