DNA Binding Motif

Accessions: MA1337.1 (JASPAR 2018), M0213 (AthalianaCistrome v4_May2016)
Names: bZIP44, bZIP44.DAP, T03776;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1, AthalianaCistrome v4_May2016 2
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: dwwGmTGACGTGGCa
Weblogo:
PSSM: P0 A C G T
01 156 66 161 145 d
02 210 51 103 164 w
03 143 37 65 283 w
04 32 5 423 68 G
05 153 320 54 1 m
06 3 24 1 500 T
07 0 0 479 49 G
08 528 0 0 0 A
09 0 520 0 8 C
10 4 1 523 0 G
11 2 1 0 525 T
12 0 0 528 0 G
13 0 0 425 103 G
14 124 397 1 6 C
15 328 79 71 50 a
Binding TFs: T03776 / C0Z2L5 (Basic region leucine zipper, bZIP transcription factor)
Binding Sites: MA1337.1.2
MA1337.1.19
MA1337.1.20
MA1337.1.13 / MA1337.1.12
MA1337.1.10
MA1337.1.17
MA1337.1.11
MA1337.1.16
MA1337.1.3
MA1337.1.6
MA1337.1.4
MA1337.1.7
MA1337.1.5
MA1337.1.8
MA1337.1.9
MA1337.1.18
MA1337.1.1
MA1337.1.14
MA1337.1.15
Publications: Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.. Plant J. 13:489-505 (1998). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

Disclaimer

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