DNA Binding Motif

						

			
Accessions: MA0484.1 (JASPAR 2024)

			
Names: HNF4G
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 15
Consensus: arrGkyCAAAGkyCA
Weblogo: 
PSSM: P0      A      C      G      T
01   3514   1864   2011   2063      a
02   3259   1531   3830    832      r
03   4696    102   3811    843      r
04   1103    201   7480    668      G
05   1944    713   3301   3494      k
06   1511   2870   2279   2792      y
07      0   8827    221    404      C
08   9343     55     54      0      A
09   7889     82   1481      0      A
10   8464      0    938     50      A
11     99      6   9098    249      G
12    324    143   3624   5361      k
13    225   4338   1107   3782      y
14    159   8377     85    831      C
15   6785    794    556   1317      A
Type: Heterodimer
Binding TFs: Q14541 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
Q14541
Binding Sites: MA0484.1.1
MA0484.1.10
MA0484.1.11
MA0484.1.12
MA0484.1.13
MA0484.1.14
MA0484.1.15
MA0484.1.16
MA0484.1.17
MA0484.1.18
MA0484.1.19
MA0484.1.2
MA0484.1.20
MA0484.1.3
MA0484.1.4
MA0484.1.5
MA0484.1.6
MA0484.1.7
MA0484.1.8
MA0484.1.9
			
Publications: Fang B, Mane-Padros D, Bolotin E, Jiang T, Sladek F.M. Identification of a binding motif specific to HNF4 by comparative analysis of multiple nuclear receptors. Nucleic acids research 40:5343-56 (2012). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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