DNA Binding Motif

						

			
Accessions: CN0010.1 (JASPAR 2024)

			
Names: LM10
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 18
Consensus: ykGTTkCCATGGmAACmr
Weblogo: 
PSSM: P0      A      C      G      T
01   1227   1693    963   2031      y
02    916    594   2729   1675      k
03    388     86   5216    224      G
04     75    458     62   5319      T
05     74    377    188   5275      T
06    649    715   2099   2451      k
07     44   5433     26    411      C
08     56   5084     10    764      C
09   4349    645      7    913      A
10   1034    309    310   4261      T
11    584     11   5250     69      G
12    231    131   5480     72      G
13   3016   1928     27    943      m
14   4787     54    706    367      A
15   5716     84     58     56      A
16    135   5431     90    258      C
17   3329   1691     68    826      m
18   2696    643   2064    511      r
			
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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